Print file information:
RUN_IN_PLACE=no
LINUXCNC_DIR=
LINUXCNC_BIN_DIR=/usr/bin
LINUXCNC_TCL_DIR=/usr/lib/tcltk/linuxcnc
LINUXCNC_SCRIPT_DIR=
LINUXCNC_RTLIB_DIR=/usr/realtime-2.6.32-122-rtai/modules/linuxcnc
LINUXCNC_CONFIG_DIR=
LINUXCNC_LANG_DIR=/usr/share/linuxcnc/tcl/msgs
INIVAR=inivar
HALCMD=halcmd
LINUXCNC_EMCSH=/usr/bin/wish8.5
LINUXCNC - 2.5.2
Machine configuration directory is '/home/john/linuxcnc/configs/new_LinuxCNC_machine'
Machine configuration file is 'new_LinuxCNC_machine.ini'
INIFILE=/home/john/linuxcnc/configs/new_LinuxCNC_machine/new_LinuxCNC_machine.ini
PARAMETER_FILE=linuxcnc.var
TASK=milltask
HALUI=halui
DISPLAY=axis
Starting LinuxCNC...
Starting LinuxCNC server program: linuxcncsvr
Loading Real Time OS, RTAPI, and HAL_LIB modules
Starting LinuxCNC IO program: io
Starting HAL User Interface program: halui
Shutting down and cleaning up LinuxCNC...
Running HAL shutdown script
Killing task linuxcncsvr, PID=2490
Removing HAL_LIB, RTAPI, and Real Time OS modules
Removing NML shared memory segments
Cleanup done

Debug file information:
Can not find -sec MOT -var MOT -num 1 
Can not find -sec IO -var IO -num 1 
Can not find -sec LINUXCNC -var NML_FILE -num 1 
Can not find -sec EMC -var NML_FILE -num 1 
new_LinuxCNC_machine.hal:26: Pin 'hm2_5i25.0.7i77.0.0.output-00' does not exist
2490
  PID TTY      STAT   TIME COMMAND
Stopping realtime threads
Unloading hal components

Kernel message information:
[ 4659.534527] I-pipe: Domain RTAI registered.
[ 4659.534544] RTAI[hal]: <3.8.1> mounted over IPIPE-NOTHREADS 2.6-03.
[ 4659.534551] RTAI[hal]: compiled with gcc version 4.4.3 (Ubuntu 4.4.3-4ubuntu5) .
[ 4659.534654] RTAI[hal]: mounted (IPIPE-NOTHREADS, IMMEDIATE (INTERNAL IRQs DISPATCHED), ISOL_CPUS_MASK: 0).
[ 4659.534660] PIPELINE layers:
[ 4659.534667] f8399e20 9ac15d93 RTAI 200
[ 4659.534672] c085cb20 0 Linux 100
[ 4659.577385] RTAI[malloc]: global heap size = 2097152 bytes, <BSD>.
[ 4659.578342] RTAI[sched]: IMMEDIATE, MP, USER/KERNEL SPACE: <with RTAI OWN KTASKs>, kstacks pool size = 524288 bytes.
[ 4659.578357] RTAI[sched]: hard timer type/freq = APIC/8333539(Hz); default timing: periodic; linear timed lists.
[ 4659.578367] RTAI[sched]: Linux timer freq = 250 (Hz), TimeBase freq = 1866741000 hz.
[ 4659.578373] RTAI[sched]: timer setup = 999 ns, resched latency = 2944 ns.
[ 4659.578679] RTAI[usi]: enabled.
[ 4659.653932] RTAI[math]: loaded.
[ 4659.778938] hm2: loading Mesa HostMot2 driver version 0.15
[ 4659.783775] hm2_pci: loading Mesa AnyIO HostMot2 driver version 0.7
[ 4659.783842] hm2_pci 0000:02:00.0: PCI INT A -> GSI 20 (level, low) -> IRQ 20
[ 4659.783852] hm2_pci: discovered 5i25 at 0000:02:00.0
[ 4659.786105] hm2/hm2_5i25.0: Smart Serial Firmware Version 38
[ 4659.844814] hm2/hm2_5i25.0: 34 I/O Pins used:
[ 4659.844823] hm2/hm2_5i25.0:     IO Pin 000 (P3-01): IOPort
[ 4659.844829] hm2/hm2_5i25.0:     IO Pin 001 (P3-14): IOPort
[ 4659.844835] hm2/hm2_5i25.0:     IO Pin 002 (P3-02): IOPort
[ 4659.844840] hm2/hm2_5i25.0:     IO Pin 003 (P3-15): IOPort
[ 4659.844845] hm2/hm2_5i25.0:     IO Pin 004 (P3-03): IOPort
[ 4659.844851] hm2/hm2_5i25.0:     IO Pin 005 (P3-16): IOPort
[ 4659.844856] hm2/hm2_5i25.0:     IO Pin 006 (P3-04): IOPort
[ 4659.844863] hm2/hm2_5i25.0:     IO Pin 007 (P3-17): Muxed Encoder Select #0, pin Mux Select 0 (Output)
[ 4659.844870] hm2/hm2_5i25.0:     IO Pin 008 (P3-05): Muxed Encoder #0, pin Muxed A (Input)
[ 4659.844877] hm2/hm2_5i25.0:     IO Pin 009 (P3-06): Muxed Encoder #0, pin Muxed B (Input)
[ 4659.844884] hm2/hm2_5i25.0:     IO Pin 010 (P3-07): Muxed Encoder #0, pin Muxed Index (Input)
[ 4659.844891] hm2/hm2_5i25.0:     IO Pin 011 (P3-08): Muxed Encoder #1, pin Muxed A (Input)
[ 4659.844898] hm2/hm2_5i25.0:     IO Pin 012 (P3-09): Muxed Encoder #1, pin Muxed B (Input)
[ 4659.844905] hm2/hm2_5i25.0:     IO Pin 013 (P3-10): Muxed Encoder #1, pin Muxed Index (Input)
[ 4659.844912] hm2/hm2_5i25.0:     IO Pin 014 (P3-11): Muxed Encoder #2, pin Muxed A (Input)
[ 4659.844919] hm2/hm2_5i25.0:     IO Pin 015 (P3-12): Muxed Encoder #2, pin Muxed B (Input)
[ 4659.844926] hm2/hm2_5i25.0:     IO Pin 016 (P3-13): Muxed Encoder #2, pin Muxed Index (Input)
[ 4659.844932] hm2/hm2_5i25.0:     IO Pin 017 (P2-01): IOPort
[ 4659.844937] hm2/hm2_5i25.0:     IO Pin 018 (P2-14): IOPort
[ 4659.844943] hm2/hm2_5i25.0:     IO Pin 019 (P2-02): IOPort
[ 4659.844948] hm2/hm2_5i25.0:     IO Pin 020 (P2-15): IOPort
[ 4659.844953] hm2/hm2_5i25.0:     IO Pin 021 (P2-03): IOPort
[ 4659.844958] hm2/hm2_5i25.0:     IO Pin 022 (P2-16): IOPort
[ 4659.844964] hm2/hm2_5i25.0:     IO Pin 023 (P2-04): IOPort
[ 4659.844969] hm2/hm2_5i25.0:     IO Pin 024 (P2-17): IOPort
[ 4659.844974] hm2/hm2_5i25.0:     IO Pin 025 (P2-05): IOPort
[ 4659.844980] hm2/hm2_5i25.0:     IO Pin 026 (P2-06): IOPort
[ 4659.844985] hm2/hm2_5i25.0:     IO Pin 027 (P2-07): IOPort
[ 4659.844990] hm2/hm2_5i25.0:     IO Pin 028 (P2-08): IOPort
[ 4659.844995] hm2/hm2_5i25.0:     IO Pin 029 (P2-09): IOPort
[ 4659.845001] hm2/hm2_5i25.0:     IO Pin 030 (P2-10): IOPort
[ 4659.845006] hm2/hm2_5i25.0:     IO Pin 031 (P2-11): IOPort
[ 4659.845011] hm2/hm2_5i25.0:     IO Pin 032 (P2-12): IOPort
[ 4659.845017] hm2/hm2_5i25.0:     IO Pin 033 (P2-13): IOPort
[ 4659.845147] hm2/hm2_5i25.0: registered
[ 4659.845152] hm2_5i25.0: initialized AnyIO board at 0000:02:00.0
[ 4660.403078] hm2_5i25.0: dropping AnyIO board at 0000:02:00.0
[ 4660.403090] hm2/hm2_5i25.0: unregistered
[ 4660.403119] hm2_pci 0000:02:00.0: PCI INT A disabled
[ 4660.403165] hm2_pci: driver unloaded
[ 4660.407877] hm2: unloading
[ 4660.473248] RTAI[math]: unloaded.
[ 4660.510001] SCHED releases registered named ALIEN RTGLBH
[ 4660.577799] RTAI[malloc]: unloaded.
[ 4660.675673] RTAI[sched]: unloaded (forced hard/soft/hard transitions: traps 0, syscalls 0).
[ 4660.680068] I-pipe: Domain RTAI unregistered.
[ 4660.680210] RTAI[hal]: unmounted.