Precix 5x10 Y axis error

When I go to home the machine the z homes then the x but when it comes to the y it jumps about a inch then says y axis error. Any help would be greatly appreciated. I swapped the y and x encoder cables and nothing changed. I swapped the power cables nothing changed. I changed the amplifier nothing changed. I swapped the y moter with the z axis and immediately the z axis did the slight jump then a error. I ordered a new motor/encoder and just tried it out being certain that was the issue and it’s still doing the same thing. Any ideas? I thinking about changing out the limit switch wires, the lights on the board say they are working but I don’t have anything left to try. They have been repaired a few times.