I will try to make it all over again downloading the file 5i25.zip from your site. I have chosen to modify the project ifive and my file is working perfectly, the only issue is I can't shut the PC down.
constant PinDesc : PinDescType :

-- Base func sec unit sec func sec pin -- external DB25
IOPortTag & x"00" & PWMTag & PWMAOutPin, -- I/O 00 PIN 1 PWM
IOPortTag & x"00" & NullTag & NullPin, -- I/O 01 PIN 14 just GPIO
IOPortTag & x"00" & StepGenTag & StepGenStepPin, -- I/O 02 PIN 2 X Step
IOPortTag & x"00" & NullTag & NullPin, -- I/O 03 PIN 15 just GPIO
IOPortTag & x"00" & StepGenTag & StepGenDirPin, -- I/O 04 PIN 3 X Dir
IOPortTag & x"00" & NullTag & NullPin, -- I/O 05 PIN 16 just GPIO
IOPortTag & x"01" & StepGenTag & StepGenStepPin, -- I/O 06 PIN 4 Y Step
IOPortTag & x"00" & NullTag & NullPin, -- I/O 07 PIN 17 just GPIO
IOPortTag & x"01" & StepGenTag & StepGenDirPin, -- I/O 08 PIN 5 Y Dir
IOPortTag & x"02" & StepGenTag & StepGenStepPin, -- I/O 09 PIN 6 Z Step
IOPortTag & x"02" & StepGenTag & StepGenDirPin, -- I/O 10 PIN 7 Z Dir
IOPortTag & x"03" & StepGenTag & StepGenStepPin, -- I/O 11 PIN 8 A Step
IOPortTag & x"03" & StepGenTag & StepGenDirPin, -- I/O 12 PIN 9 A Dir
IOPortTag & x"00" & NullTag & NullPin, -- I/O 13 PIN 10 just GPIO
IOPortTag & x"00" & NullTag & NullPin, -- I/O 14 PIN 11 just GPIO
IOPortTag & x"00" & NullTag & NullPin, -- I/O 15 PIN 12 just GPIO
IOPortTag & x"00" & NullTag & NullPin, -- I/O 16 PIN 13 just GPIO
-- 26 HDR -- IDC DB25
IOPortTag & x"01" & PWMTag & PWMAOutPin, -- I/O 17 PIN 1 PIN 1 PWM
IOPortTag & x"00" & NullTag & NullPin, -- I/O 18 PIN 2 PIN 14 just GPIO
IOPortTag & x"04" & StepGenTag & StepGenStepPin, -- I/O 19 PIN 3 PIN 2 X2 Step
IOPortTag & x"00" & NullTag & NullPin, -- I/O 20 PIN 4 PIN 15 just GPIO
IOPortTag & x"04" & StepGenTag & StepGenDirPin, -- I/O 21 PIN 5 PIN 3 X2 Dir
IOPortTag & x"00" & NullTag & NullPin, -- I/O 22 PIN 6 PIN 16 just GPIO
IOPortTag & x"05" & StepGenTag & StepGenStepPin, -- I/O 23 PIN 7 PIN 4 Y2 Step
IOPortTag & x"00" & NullTag & NullPin, -- I/O 24 PIN 8 PIN 17 just GPIO
IOPortTag & x"05" & StepGenTag & StepGenDirPin, -- I/O 25 PIN 9 PIN 5 Y2 Dir
IOPortTag & x"06" & StepGenTag & StepGenStepPin, -- I/O 26 PIN 11 PIN 6 Z2 Step
IOPortTag & x"06" & StepGenTag & StepGenDirPin, -- I/O 27 PIN 13 PIN 7 Z2 Dir
IOPortTag & x"07" & StepGenTag & StepGenStepPin, -- I/O 28 PIN 15 PIN 8 A2 Step
IOPortTag & x"07" & StepGenTag & StepGenDirPin, -- I/O 29 PIN 17 PIN 9 A2 Dir
IOPortTag & x"00" & NullTag & NullPin, -- I/O 30 PIN 19 PIN 10 just GPIO
IOPortTag & x"00" & NullTag & NullPin, -- I/O 31 PIN 21 PIN 11 just GPIO
IOPortTag & x"00" & NullTag & NullPin, -- I/O 32 PIN 23 PIN 12 just GPIO
IOPortTag & x"00" & NullTag & NullPin, -- I/O 33 PIN 25 PIN 13 just GPIO