Commission drive on AX5206) using TC3 to prep for linuxcnc-ethercat

Hi everyone,
I seek help in commissioning a Motor with a Beckhoff Ax5000 series drive within TwinCAT to then transfer that tested setup to linuxcnc-ethercat. I cannot for the life of me get that motor to run over.
Setup:
Motor: HarmonicDrive LynxDrive-20C-100-MEE-AO (reduction 100, MEE Encoder (Heidenhain EQN-1125 Endat 2.2/2.1), motor values are known, commutation unknown)
Driver: Beckhoff AX5206-0000-0203 Fw 1.06
Goal: Be bale to move the drive from NC in Twincat to check for functionality of the setup
What did I try:
- Scan Bus in TwinCat to find devices
- Found the Driver
- Setup of power management, safety (off), set mode for channel 1 to position control
- Setup Channel 1: X11 for encoder connector, selected Heidenhain EQN1125 from list, manually setup the motor with relevant values (pdf: harmonicdrive.de/fileadmin/user_upload/E...8856_08_2018_V04.pdf, page 17)
    When I try to scan for the encoder it identifies as Endat 2.2 without a nameplate. However, when selecting an Endat2.2 from the list of encoders, it does not work. (0xF148: Build drive system: unknown feedback system)
    Question: I assumed that this table takes the values for the motor and not for the output shaft (which is behind the harmonic drive's reduction), correct?
- Setup of scaling
     Question:  Here I am not sure. To me it makes the most sense to set this up for the motor shaft (as this is where the encoder is). I.e. 360°/motor revolution (see screenshot) - correct?
 
Next would be to setup the commutation setup (mechanical and electrical offset).
This is where I struggle.  The manual (www.beckhoff.com/en-en/download/61857533) states two different chapters regarding commutation:

1) Chapter 9.1.4 Third-party Motors
Step one asks to ensure motor rotation: The output shaft is connected to the HD. Given a reduction of 100 it is really difficult to backdrive the thing. Question: Am I correct in assuming that the HD reverses the direction of rotation? that is: if the servo motor moves CW, the output moves CCW?
Next step is the electrical commutation offset determination.
I tried to follow page 168ff using P-0-0166:
I get values after starting the command, with equal directions being "No". Changing U and V accordingly changes direction of the motor, but has no effect. I cannot get a constant value. I keep chasing my tail around.
Note: At this point P-0-0150 Commutation Node is set to 3; Adjustable commutation offset (mechanical) is 0 deg

I then followed chapter
Manual 9.6 list commutation methods (p 201ff)
Accordinglx, P-0-0160 is executed first
Regardless of the actual value of P-0-00578 (Electrical commutation offset) I get a value for the mechanical commutation offset which I enter in P-0-0150 above.
Doing so, an flipping the polarity of UV, I then get the following result for P-0-0166: Equal Directions: yes; Offset: 357.55 deg
 
I do not understand what way is the correct way. Accordingly, I am not sure if the offset is correct.
Now I undertand I should be able to move th eaxis using NC-A: Online (image 3)
 
I can enable the drive and it does start to make light noises and one can feel light vibration on the output shaft.
However, when I send a command using F2/F3 I get an increase in following error and nothing moves. (Image 4).
 
Parameters of the axis enc are as indicated by image 5.
 
I assume something in scaling is borked and thus the PID cant work properly. But I cannot find anything that is missing.

- I have checked (to the best of my ability) the polarity and pins for both the power and the encoder connector. At this point I assume that these are correct.
- I have manually pulsed the motor with a low dc voltage, It then performs the expected jump. The encoder provides a new value afterwards as well.
I am open for any and all advice. It must be sooo close.
Thank you!
 

If you need startup jogging and you need to tune the servo ... you need to turn off Lag monitor under the  Axis X.. Parameter ... Monitoring: Position Lag Monitor = False ...

If you have reduction factor ... you will determine it in the nominator and denominator rows somewhere in the drive manager ...

Yes one motor revolution == one encoder revolution ..

Yes HD should reverse you motion .. every odd 

This setting you generally free enable movement... next tune or you will need firmware update to start autotunnig the servo system ..